IL_6VWM_146

3D structure

PDB id

6VWM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUUUGAAGUG*CAUGGAG

Length

17 nucleotides

Bulged bases

6VWM|1|2|U|2132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VWM|1|2|C|2129
6VWM|1|2|U|2130
6VWM|1|2|U|2131
6VWM|1|2|U|2132
6VWM|1|2|G|2133
6VWM|1|2|A|2134
6VWM|1|2|A|2135
6VWM|1|2|G|2136
6VWM|1|2|U|2137
6VWM|1|2|G|2138
*
6VWM|1|2|C|2153
6VWM|1|2|A|2154
6VWM|1|2|U|2155
6VWM|1|2|G|2156
6VWM|1|2|G|2157
6VWM|1|2|A|2158
6VWM|1|2|G|2159

Current chains

Chain 2

23S ribosomal RNA

Nearby chains