IL_6VWM_170

3D structure

PDB id

6VWM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGC*GUAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VWM_170 not in the Motif Atlas

Geometric match to IL_7RQB_093

Geometric discrepancy: 0.3161

The information below is about IL_7RQB_093

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_63450.2

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

8

Unit IDs

6VWM|1|3|C|17
6VWM|1|3|G|18
6VWM|1|3|C|19
*
6VWM|1|3|G|64
6VWM|1|3|U|65
6VWM|1|3|A|66
6VWM|1|3|G|67

Current chains

Chain 3

5S ribosomal RNA

Nearby chains

Chain 2

Large subunit ribosomal RNA; LSU rRNA