IL_6VWM_184

3D structure

PDB id

6VWM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

6VWM|1|2|G|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VWM_184 not in the Motif Atlas

Homologous match to IL_4WF9_117

Geometric discrepancy: 0.1371

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

6VWM|1|2|G|1666
6VWM|1|2|G|1667
6VWM|1|2|A|1668
6VWM|1|2|A|1669
6VWM|1|2|C|1670
6VWM|1|2|U|1671
6VWM|1|2|A|1672
6VWM|1|2|G|1673
6VWM|1|2|G|1674
*
6VWM|1|2|C|1990
6VWM|1|2|U|1991
6VWM|1|2|G|1992
6VWM|1|2|U|1993
6VWM|1|2|C|1994

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain I

50S ribosomal protein L14