IL_6VYQ_022

3D structure

PDB id

6VYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing an 15 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

6VYQ|1|D|U|485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VYQ_022 not in the Motif Atlas

Geometric match to IL_5J7L_022

Geometric discrepancy: 0.065

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6VYQ|1|D|G|446
6VYQ|1|D|G|447
6VYQ|1|D|A|448
6VYQ|1|D|G|449
6VYQ|1|D|G|450
*
6VYQ|1|D|C|483
6VYQ|1|D|G|484
6VYQ|1|D|U|485
6VYQ|1|D|U|486
6VYQ|1|D|A|487
6VYQ|1|D|C|488

Current chains

Chain D

16S rRNA

Nearby chains

Chain J

30S ribosomal protein S4

Chain U

30S ribosomal protein S16