IL_6VYQ_061
3D structure
- PDB id
- 6VYQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation complex A1 (TTC-A1) containing an 15 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GUAC*GAAGUC
- Length
- 10 nucleotides
- Bulged bases
- 6VYQ|1|D|A|1492, 6VYQ|1|D|A|1493
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6VYQ_061 not in the Motif Atlas
- Homologous match to IL_6CZR_167
- Geometric discrepancy: 0.4923
- The information below is about IL_6CZR_167
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_49751.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 18
Unit IDs
6VYQ|1|D|G|1405
6VYQ|1|D|U|1406
6VYQ|1|D|A|1408
6VYQ|1|D|C|1409
*
6VYQ|1|D|G|1491
6VYQ|1|D|A|1492
6VYQ|1|D|A|1493
6VYQ|1|D|G|1494
6VYQ|1|D|U|1495
6VYQ|1|D|C|1496
Current chains
- Chain D
- 16S rRNA
Nearby chains
- Chain 7
- mRNA with 15 nt long spacer
- Chain B
- Transfer RNA; tRNA
- Chain R
- 30S ribosomal protein S12
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: