IL_6VYQ_077
3D structure
- PDB id
- 6VYQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation complex A1 (TTC-A1) containing an 15 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GAAC*GAGUGAAAAAGAAC
- Length
- 18 nucleotides
- Bulged bases
- 6VYQ|1|a|A|504, 6VYQ|1|a|A|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6VYQ_077 not in the Motif Atlas
- Geometric match to IL_5J7L_255
- Geometric discrepancy: 0.0631
- The information below is about IL_5J7L_255
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_81516.2
- Basepair signature
- cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
- Number of instances in this motif group
- 6
Unit IDs
6VYQ|1|a|G|481
6VYQ|1|a|A|482
6VYQ|1|a|A|483
6VYQ|1|a|C|484
*
6VYQ|1|a|G|496
6VYQ|1|a|A|497
6VYQ|1|a|G|498
6VYQ|1|a|U|499
6VYQ|1|a|G|500
6VYQ|1|a|A|501
6VYQ|1|a|A|502
6VYQ|1|a|A|503
6VYQ|1|a|A|504
6VYQ|1|a|A|505
6VYQ|1|a|G|506
6VYQ|1|a|A|507
6VYQ|1|a|A|508
6VYQ|1|a|C|509
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 1
- 50S ribosomal protein L22
- Chain 3
- 50S ribosomal protein L24
Coloring options: