IL_6VYQ_121

3D structure

PDB id

6VYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing an 15 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGAAG*CUAAG

Length

10 nucleotides

Bulged bases

6VYQ|1|a|A|1420

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VYQ_121 not in the Motif Atlas

Homologous match to IL_5J7L_295

Geometric discrepancy: 0.0803

The information below is about IL_5J7L_295

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

6VYQ|1|a|C|1417
6VYQ|1|a|G|1418
6VYQ|1|a|A|1419
6VYQ|1|a|A|1420
6VYQ|1|a|G|1421
*
6VYQ|1|a|C|1577
6VYQ|1|a|U|1578
6VYQ|1|a|A|1579
6VYQ|1|a|A|1580
6VYQ|1|a|G|1581

Current chains

Chain a

23S rRNA

Nearby chains