IL_6VYQ_135

3D structure

PDB id

6VYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing an 15 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

6VYQ|1|a|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VYQ_135 not in the Motif Atlas

Homologous match to IL_5J7L_309

Geometric discrepancy: 0.1163

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6VYQ|1|a|U|1712
6VYQ|1|a|A|1713
6VYQ|1|a|U|1714
6VYQ|1|a|G|1715
6VYQ|1|a|U|1716
6VYQ|1|a|A|1717
6VYQ|1|a|G|1718
*
6VYQ|1|a|U|1742
6VYQ|1|a|G|1743
6VYQ|1|a|A|1744
6VYQ|1|a|A|1745
6VYQ|1|a|A|1746

Current chains

Chain a

23S rRNA

Nearby chains