IL_6VYQ_167

3D structure

PDB id

6VYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing an 15 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CA*UACG

Length

6 nucleotides

Bulged bases

6VYQ|1|a|A|2572, 6VYQ|1|a|C|2573

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VYQ_167 not in the Motif Atlas

Homologous match to IL_5J7L_341

Geometric discrepancy: 0.0627

The information below is about IL_5J7L_341

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

6VYQ|1|a|C|2512
6VYQ|1|a|A|2513
*
6VYQ|1|a|U|2571
6VYQ|1|a|A|2572
6VYQ|1|a|C|2573
6VYQ|1|a|G|2574

Current chains

Chain a

23S rRNA

Nearby chains

Chain B

Transfer RNA; tRNA

Chain j

50S ribosomal protein L3

Chain s

50S ribosomal protein L13