IL_6VYQ_199

3D structure

PDB id

6VYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing an 15 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGGAG*CGACCUUGAAAUACC

Length

20 nucleotides

Bulged bases

6VYQ|1|a|U|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VYQ|1|a|G|2123
6VYQ|1|a|G|2124
6VYQ|1|a|G|2125
6VYQ|1|a|A|2126
6VYQ|1|a|G|2127
*
6VYQ|1|a|C|2161
6VYQ|1|a|G|2162
6VYQ|1|a|A|2163
6VYQ|1|a|C|2164
6VYQ|1|a|C|2165
6VYQ|1|a|U|2166
6VYQ|1|a|U|2167
6VYQ|1|a|G|2168
6VYQ|1|a|A|2169
6VYQ|1|a|A|2170
6VYQ|1|a|A|2171
6VYQ|1|a|U|2172
6VYQ|1|a|A|2173
6VYQ|1|a|C|2174
6VYQ|1|a|C|2175

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Transfer RNA; tRNA