IL_6VYR_045

3D structure

PDB id

6VYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing an 18 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAAG*UGUGCCUUCGGGAAC

Length

19 nucleotides

Bulged bases

6VYR|1|D|U|1025, 6VYR|1|D|U|1030, 6VYR|1|D|G|1032

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VYR|1|D|G|1003
6VYR|1|D|A|1004
6VYR|1|D|A|1005
6VYR|1|D|G|1006
*
6VYR|1|D|U|1023
6VYR|1|D|G|1024
6VYR|1|D|U|1025
6VYR|1|D|G|1026
6VYR|1|D|C|1027
6VYR|1|D|C|1028
6VYR|1|D|U|1029
6VYR|1|D|U|1030
6VYR|1|D|C|1031
6VYR|1|D|G|1032
6VYR|1|D|G|1033
6VYR|1|D|G|1034
6VYR|1|D|A|1035
6VYR|1|D|A|1036
6VYR|1|D|C|1037

Current chains

Chain D

16S rRNA

Nearby chains

Chain AA

DNA-directed RNA polymerase subunit beta

Chain S

30S ribosomal protein S14