IL_6VYR_054

3D structure

PDB id

6VYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing an 18 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUGC*GAGGAAG

Length

11 nucleotides

Bulged bases

6VYR|1|D|U|1159

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VYR_054 not in the Motif Atlas

Geometric match to IL_5J7L_053

Geometric discrepancy: 0.1238

The information below is about IL_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42032.1

Basepair signature

cWW-cSH-cWW-tWH-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

6VYR|1|D|C|1158
6VYR|1|D|U|1159
6VYR|1|D|G|1160
6VYR|1|D|C|1161
*
6VYR|1|D|G|1175
6VYR|1|D|A|1176
6VYR|1|D|G|1177
6VYR|1|D|G|1178
6VYR|1|D|A|1179
6VYR|1|D|A|1180
6VYR|1|D|G|1181

Current chains

Chain D

16S rRNA

Nearby chains

Chain G

30S ribosomal protein S2

Chain O

30S ribosomal protein S9