IL_6VYR_061

3D structure

PDB id

6VYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing an 18 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUAC*GAAGUC

Length

10 nucleotides

Bulged bases

6VYR|1|D|A|1492, 6VYR|1|D|A|1493

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VYR|1|D|G|1405
6VYR|1|D|U|1406
6VYR|1|D|A|1408
6VYR|1|D|C|1409
*
6VYR|1|D|G|1491
6VYR|1|D|A|1492
6VYR|1|D|A|1493
6VYR|1|D|G|1494
6VYR|1|D|U|1495
6VYR|1|D|C|1496

Current chains

Chain D

16S rRNA

Nearby chains

Chain 7

mRNA with 18 nt long spacer

Chain B

Transfer RNA; tRNA

Chain R

30S ribosomal protein S12

Chain a

Large subunit ribosomal RNA; LSU rRNA