IL_6VYR_133
3D structure
- PDB id
- 6VYR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation complex A1 (TTC-A1) containing an 18 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- ACUAGG*CUGU
- Length
- 10 nucleotides
- Bulged bases
- 6VYR|1|a|G|1992
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6VYR_133 not in the Motif Atlas
- Geometric match to IL_5J7L_307
- Geometric discrepancy: 0.0479
- The information below is about IL_5J7L_307
- Detailed Annotation
- Intercalated tWH
- Broad Annotation
- Intercalated tWH
- Motif group
- IL_76758.2
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 7
Unit IDs
6VYR|1|a|A|1669
6VYR|1|a|C|1670
6VYR|1|a|U|1671
6VYR|1|a|A|1672
6VYR|1|a|G|1673
6VYR|1|a|G|1674
*
6VYR|1|a|C|1990
6VYR|1|a|U|1991
6VYR|1|a|G|1992
6VYR|1|a|U|1993
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain j
- 50S ribosomal protein L3
- Chain t
- 50S ribosomal protein L14
Coloring options: