IL_6VYR_134

3D structure

PDB id

6VYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing an 18 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

6VYR|1|a|G|1699

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VYR_134 not in the Motif Atlas

Geometric match to IL_5J7L_308

Geometric discrepancy: 0.0585

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6VYR|1|a|C|1686
6VYR|1|a|G|1687
6VYR|1|a|U|1688
6VYR|1|a|A|1689
6VYR|1|a|A|1690
6VYR|1|a|C|1691
*
6VYR|1|a|G|1696
6VYR|1|a|G|1697
6VYR|1|a|A|1698
6VYR|1|a|G|1699
6VYR|1|a|A|1700
6VYR|1|a|A|1701
6VYR|1|a|G|1702

Current chains

Chain a

23S rRNA

Nearby chains

Chain D

Small subunit ribosomal RNA; SSU rRNA

Chain h

50S ribosomal protein L2