IL_6VYR_161

3D structure

PDB id

6VYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing an 18 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGG*CACU

Length

7 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VYR_161 not in the Motif Atlas

Homologous match to IL_5J7L_335

Geometric discrepancy: 0.0803

The information below is about IL_5J7L_335

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VYR|1|a|A|2453
6VYR|1|a|G|2454
6VYR|1|a|G|2455
*
6VYR|1|a|C|2496
6VYR|1|a|A|2497
6VYR|1|a|C|2499
6VYR|1|a|U|2500

Current chains

Chain a

23S rRNA

Nearby chains

Chain j

50S ribosomal protein L3

Chain v

50S ribosomal protein L16