IL_6VYR_191

3D structure

PDB id

6VYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing an 18 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAAGCGACC*GCAAGCGGACC

Length

20 nucleotides

Bulged bases

6VYR|1|D|A|1257, 6VYR|1|D|A|1280, 6VYR|1|D|C|1281

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VYR|1|D|G|1255
6VYR|1|D|A|1256
6VYR|1|D|A|1257
6VYR|1|D|G|1258
6VYR|1|D|C|1259
6VYR|1|D|G|1260
6VYR|1|D|A|1261
6VYR|1|D|C|1262
6VYR|1|D|C|1263
*
6VYR|1|D|G|1272
6VYR|1|D|C|1273
6VYR|1|D|A|1274
6VYR|1|D|A|1275
6VYR|1|D|G|1276
6VYR|1|D|C|1277
6VYR|1|D|G|1278
6VYR|1|D|G|1279
6VYR|1|D|A|1280
6VYR|1|D|C|1281
6VYR|1|D|C|1282

Current chains

Chain D

16S rRNA

Nearby chains

Chain I

30S ribosomal protein S3

Chain P

30S ribosomal protein S10

Chain S

30S ribosomal protein S14

Chain W

30S ribosomal protein S19