IL_6VYR_194

3D structure

PDB id

6VYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing an 18 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCAAGG*CCAACC

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VYR_194 not in the Motif Atlas

Geometric match to IL_8C3A_028

Geometric discrepancy: 0.3981

The information below is about IL_8C3A_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6VYR|1|a|G|875
6VYR|1|a|C|876
6VYR|1|a|A|877
6VYR|1|a|A|878
6VYR|1|a|G|879
6VYR|1|a|G|880
*
6VYR|1|a|C|897
6VYR|1|a|C|898
6VYR|1|a|A|899
6VYR|1|a|A|900
6VYR|1|a|C|901
6VYR|1|a|C|902

Current chains

Chain a

23S rRNA

Nearby chains

Chain v

50S ribosomal protein L16