IL_6VYS_045

3D structure

PDB id

6VYS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing a 21 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAAG*UGUGCCUUCGGGAAC

Length

19 nucleotides

Bulged bases

6VYS|1|D|U|1025, 6VYS|1|D|U|1030, 6VYS|1|D|G|1032

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VYS|1|D|G|1003
6VYS|1|D|A|1004
6VYS|1|D|A|1005
6VYS|1|D|G|1006
*
6VYS|1|D|U|1023
6VYS|1|D|G|1024
6VYS|1|D|U|1025
6VYS|1|D|G|1026
6VYS|1|D|C|1027
6VYS|1|D|C|1028
6VYS|1|D|U|1029
6VYS|1|D|U|1030
6VYS|1|D|C|1031
6VYS|1|D|G|1032
6VYS|1|D|G|1033
6VYS|1|D|G|1034
6VYS|1|D|A|1035
6VYS|1|D|A|1036
6VYS|1|D|C|1037

Current chains

Chain D

16S rRNA

Nearby chains

Chain AA

DNA-directed RNA polymerase subunit beta

Chain S

30S ribosomal protein S14