IL_6VYS_179
3D structure
- PDB id
- 6VYS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation complex A1 (TTC-A1) containing a 21 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GGUG*CUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6VYS_179 not in the Motif Atlas
- Homologous match to IL_5J7L_353
- Geometric discrepancy: 0.0453
- The information below is about IL_5J7L_353
- Detailed Annotation
- Multiple bulged bases with non-canonical cWW
- Broad Annotation
- Multiple bulged bases with non-canonical cWW
- Motif group
- IL_64231.5
- Basepair signature
- cWW-cWW-L-R-L-cWW
- Number of instances in this motif group
- 11
Unit IDs
6VYS|1|a|G|2843
6VYS|1|a|G|2844
6VYS|1|a|U|2845
6VYS|1|a|G|2846
*
6VYS|1|a|C|2870
6VYS|1|a|U|2871
6VYS|1|a|A|2872
6VYS|1|a|A|2873
6VYS|1|a|C|2874
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain j
- 50S ribosomal protein L3
- Chain w
- 50S ribosomal protein L17
- Chain y
- 50S ribosomal protein L19
Coloring options: