IL_6VYS_190

3D structure

PDB id

6VYS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing a 21 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGGGGAUAAC*GCUAAUACCGC

Length

21 nucleotides

Bulged bases

6VYS|1|D|U|173

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VYS|1|D|G|144
6VYS|1|D|G|145
6VYS|1|D|G|146
6VYS|1|D|G|147
6VYS|1|D|G|148
6VYS|1|D|A|149
6VYS|1|D|U|150
6VYS|1|D|A|151
6VYS|1|D|A|152
6VYS|1|D|C|153
*
6VYS|1|D|G|168
6VYS|1|D|C|169
6VYS|1|D|U|170
6VYS|1|D|A|171
6VYS|1|D|A|172
6VYS|1|D|U|173
6VYS|1|D|A|174
6VYS|1|D|C|175
6VYS|1|D|C|176
6VYS|1|D|G|177
6VYS|1|D|C|178

Current chains

Chain D

16S rRNA

Nearby chains

Chain E

30S ribosomal protein S20