IL_6VYS_191

3D structure

PDB id

6VYS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing a 21 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAAGCGACC*GCAAGCGGACC

Length

20 nucleotides

Bulged bases

6VYS|1|D|A|1257, 6VYS|1|D|A|1280, 6VYS|1|D|C|1281

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VYS|1|D|G|1255
6VYS|1|D|A|1256
6VYS|1|D|A|1257
6VYS|1|D|G|1258
6VYS|1|D|C|1259
6VYS|1|D|G|1260
6VYS|1|D|A|1261
6VYS|1|D|C|1262
6VYS|1|D|C|1263
*
6VYS|1|D|G|1272
6VYS|1|D|C|1273
6VYS|1|D|A|1274
6VYS|1|D|A|1275
6VYS|1|D|G|1276
6VYS|1|D|C|1277
6VYS|1|D|G|1278
6VYS|1|D|G|1279
6VYS|1|D|A|1280
6VYS|1|D|C|1281
6VYS|1|D|C|1282

Current chains

Chain D

16S rRNA

Nearby chains

Chain I

30S ribosomal protein S3

Chain P

30S ribosomal protein S10

Chain S

30S ribosomal protein S14

Chain W

30S ribosomal protein S19