IL_6VYS_195

3D structure

PDB id

6VYS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing a 21 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCCAGACAGCC*GGUCGAG

Length

18 nucleotides

Bulged bases

6VYS|1|a|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VYS|1|a|C|1043
6VYS|1|a|C|1044
6VYS|1|a|C|1045
6VYS|1|a|A|1046
6VYS|1|a|G|1047
6VYS|1|a|A|1048
6VYS|1|a|C|1049
6VYS|1|a|A|1050
6VYS|1|a|G|1051
6VYS|1|a|C|1052
6VYS|1|a|C|1053
*
6VYS|1|a|G|1106
6VYS|1|a|G|1107
6VYS|1|a|U|1108
6VYS|1|a|C|1109
6VYS|1|a|G|1110
6VYS|1|a|A|1111
6VYS|1|a|G|1112

Current chains

Chain a

23S rRNA

Nearby chains

Chain 9

50S ribosomal protein L10

Chain p

50S ribosomal protein L6

Chain q

50S ribosomal protein L36