IL_6VYS_199

3D structure

PDB id

6VYS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing a 21 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGGAG*CGACCUUGAAAUACC

Length

20 nucleotides

Bulged bases

6VYS|1|a|U|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VYS|1|a|G|2123
6VYS|1|a|G|2124
6VYS|1|a|G|2125
6VYS|1|a|A|2126
6VYS|1|a|G|2127
*
6VYS|1|a|C|2161
6VYS|1|a|G|2162
6VYS|1|a|A|2163
6VYS|1|a|C|2164
6VYS|1|a|C|2165
6VYS|1|a|U|2166
6VYS|1|a|U|2167
6VYS|1|a|G|2168
6VYS|1|a|A|2169
6VYS|1|a|A|2170
6VYS|1|a|A|2171
6VYS|1|a|U|2172
6VYS|1|a|A|2173
6VYS|1|a|C|2174
6VYS|1|a|C|2175

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Transfer RNA; tRNA