3D structure

PDB id
6VZ2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation complex D1 (TTC-D1) containing mRNA with a 27 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site
Experimental method
ELECTRON MICROSCOPY
Resolution
10 Å

Loop

Sequence
GGAGG*CGUUAC
Length
11 nucleotides
Bulged bases
6VZ2|1|D|U|485
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6VZ2_022 not in the Motif Atlas
Geometric match to IL_5J7L_022
Geometric discrepancy: 0.0651
The information below is about IL_5J7L_022
Detailed Annotation
tSH-tHW-tWW
Broad Annotation
No text annotation
Motif group
IL_88269.4
Basepair signature
cWW-tWW-cSH-tWH-tHS-cWW
Number of instances in this motif group
3

Unit IDs

6VZ2|1|D|G|446
6VZ2|1|D|G|447
6VZ2|1|D|A|448
6VZ2|1|D|G|449
6VZ2|1|D|G|450
*
6VZ2|1|D|C|483
6VZ2|1|D|G|484
6VZ2|1|D|U|485
6VZ2|1|D|U|486
6VZ2|1|D|A|487
6VZ2|1|D|C|488

Current chains

Chain D
16S rRNA

Nearby chains

Chain J
30S ribosomal protein S4
Chain U
30S ribosomal protein S16

Coloring options:


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