IL_6VZ2_045

3D structure

PDB id

6VZ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex D1 (TTC-D1) containing mRNA with a 27 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

10 Å

Loop

Sequence

GAAG*UGUGCCUUCGGGAAC

Length

19 nucleotides

Bulged bases

6VZ2|1|D|U|1025, 6VZ2|1|D|U|1030, 6VZ2|1|D|G|1032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VZ2|1|D|G|1003
6VZ2|1|D|A|1004
6VZ2|1|D|A|1005
6VZ2|1|D|G|1006
*
6VZ2|1|D|U|1023
6VZ2|1|D|G|1024
6VZ2|1|D|U|1025
6VZ2|1|D|G|1026
6VZ2|1|D|C|1027
6VZ2|1|D|C|1028
6VZ2|1|D|U|1029
6VZ2|1|D|U|1030
6VZ2|1|D|C|1031
6VZ2|1|D|G|1032
6VZ2|1|D|G|1033
6VZ2|1|D|G|1034
6VZ2|1|D|A|1035
6VZ2|1|D|A|1036
6VZ2|1|D|C|1037

Current chains

Chain D

16S rRNA

Nearby chains

Chain S

30S ribosomal protein S14