3D structure

PDB id
6VZ2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation complex D1 (TTC-D1) containing mRNA with a 27 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site
Experimental method
ELECTRON MICROSCOPY
Resolution
10 Å

Loop

Sequence
GAAC*GAGUGAAAAAGAAC
Length
18 nucleotides
Bulged bases
6VZ2|1|a|A|504, 6VZ2|1|a|A|508
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6VZ2_077 not in the Motif Atlas
Homologous match to IL_5J7L_255
Geometric discrepancy: 0.0631
The information below is about IL_5J7L_255
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_81516.2
Basepair signature
cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
Number of instances in this motif group
6

Unit IDs

6VZ2|1|a|G|481
6VZ2|1|a|A|482
6VZ2|1|a|A|483
6VZ2|1|a|C|484
*
6VZ2|1|a|G|496
6VZ2|1|a|A|497
6VZ2|1|a|G|498
6VZ2|1|a|U|499
6VZ2|1|a|G|500
6VZ2|1|a|A|501
6VZ2|1|a|A|502
6VZ2|1|a|A|503
6VZ2|1|a|A|504
6VZ2|1|a|A|505
6VZ2|1|a|G|506
6VZ2|1|a|A|507
6VZ2|1|a|A|508
6VZ2|1|a|C|509

Current chains

Chain a
23S rRNA

Nearby chains

Chain 1
50S ribosomal protein L22
Chain 3
50S ribosomal protein L24

Coloring options:


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