3D structure

PDB id
6VZ2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation complex D1 (TTC-D1) containing mRNA with a 27 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site
Experimental method
ELECTRON MICROSCOPY
Resolution
10 Å

Loop

Sequence
GAUG*CGC
Length
7 nucleotides
Bulged bases
6VZ2|1|a|U|1033
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6VZ2_105 not in the Motif Atlas
Homologous match to IL_7RQB_041
Geometric discrepancy: 0.0566
The information below is about IL_7RQB_041
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
Isolated non-canonical cWW pair
Motif group
IL_43275.1
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
30

Unit IDs

6VZ2|1|a|G|1031
6VZ2|1|a|A|1032
6VZ2|1|a|U|1033
6VZ2|1|a|G|1034
*
6VZ2|1|a|C|1121
6VZ2|1|a|G|1122
6VZ2|1|a|C|1123

Current chains

Chain a
23S rRNA

Nearby chains

Chain d
5S ribosomal RNA; 5S rRNA
Chain q
50S ribosomal protein L36
Chain v
50S ribosomal protein L16

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.071 s