IL_6VZ2_156

3D structure

PDB id

6VZ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex D1 (TTC-D1) containing mRNA with a 27 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

10 Å

Loop

Sequence

UGGGAG*CGACCUUGAAAUACCA

Length

22 nucleotides

Bulged bases

6VZ2|1|a|U|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VZ2|1|a|U|2122
6VZ2|1|a|G|2123
6VZ2|1|a|G|2124
6VZ2|1|a|G|2125
6VZ2|1|a|A|2126
6VZ2|1|a|G|2127
*
6VZ2|1|a|C|2161
6VZ2|1|a|G|2162
6VZ2|1|a|A|2163
6VZ2|1|a|C|2164
6VZ2|1|a|C|2165
6VZ2|1|a|U|2166
6VZ2|1|a|U|2167
6VZ2|1|a|G|2168
6VZ2|1|a|A|2169
6VZ2|1|a|A|2170
6VZ2|1|a|A|2171
6VZ2|1|a|U|2172
6VZ2|1|a|A|2173
6VZ2|1|a|C|2174
6VZ2|1|a|C|2175
6VZ2|1|a|A|2176

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Transfer RNA; tRNA