IL_6VZ2_194

3D structure

PDB id

6VZ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex D1 (TTC-D1) containing mRNA with a 27 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

10 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

6VZ2|1|a|U|846, 6VZ2|1|a|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VZ2_194 not in the Motif Atlas

Homologous match to IL_5J7L_399

Geometric discrepancy: 0.1165

The information below is about IL_5J7L_399

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96236.1

Basepair signature

cWW-tWW-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

6VZ2|1|a|A|844
6VZ2|1|a|A|845
6VZ2|1|a|U|846
6VZ2|1|a|U|847
6VZ2|1|a|C|848
*
6VZ2|1|a|G|930
6VZ2|1|a|U|931
6VZ2|1|a|U|932
6VZ2|1|a|A|933
6VZ2|1|a|U|934

Current chains

Chain a

23S rRNA

Nearby chains

Chain f

50S ribosomal protein L30