3D structure

PDB id
6VZ2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation complex D1 (TTC-D1) containing mRNA with a 27 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site
Experimental method
ELECTRON MICROSCOPY
Resolution
10 Å

Loop

Sequence
AAUUC*GUUAU
Length
10 nucleotides
Bulged bases
6VZ2|1|a|U|846, 6VZ2|1|a|U|931
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6VZ2_194 not in the Motif Atlas
Homologous match to IL_5J7L_399
Geometric discrepancy: 0.1165
The information below is about IL_5J7L_399
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_96236.1
Basepair signature
cWW-tWW-cWW-L-cWW
Number of instances in this motif group
1

Unit IDs

6VZ2|1|a|A|844
6VZ2|1|a|A|845
6VZ2|1|a|U|846
6VZ2|1|a|U|847
6VZ2|1|a|C|848
*
6VZ2|1|a|G|930
6VZ2|1|a|U|931
6VZ2|1|a|U|932
6VZ2|1|a|A|933
6VZ2|1|a|U|934

Current chains

Chain a
23S rRNA

Nearby chains

Chain f
50S ribosomal protein L30

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.0897 s