IL_6VZ2_197

3D structure

PDB id

6VZ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex D1 (TTC-D1) containing mRNA with a 27 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

10 Å

Loop

Sequence

CCCAGACAGCC*GGUCGAG

Length

18 nucleotides

Bulged bases

6VZ2|1|a|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VZ2|1|a|C|1043
6VZ2|1|a|C|1044
6VZ2|1|a|C|1045
6VZ2|1|a|A|1046
6VZ2|1|a|G|1047
6VZ2|1|a|A|1048
6VZ2|1|a|C|1049
6VZ2|1|a|A|1050
6VZ2|1|a|G|1051
6VZ2|1|a|C|1052
6VZ2|1|a|C|1053
*
6VZ2|1|a|G|1106
6VZ2|1|a|G|1107
6VZ2|1|a|U|1108
6VZ2|1|a|C|1109
6VZ2|1|a|G|1110
6VZ2|1|a|A|1111
6VZ2|1|a|G|1112

Current chains

Chain a

23S rRNA

Nearby chains

Chain p

50S ribosomal protein L6

Chain q

50S ribosomal protein L36