IL_6VZJ_013

3D structure

PDB id

6VZJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing mRNA with a 15 nt long spacer, fMet-tRNAs at E-site and P-site, and lacking transcription factor NusG

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GGACC*GGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VZJ_013 not in the Motif Atlas

Homologous match to IL_5J7L_013

Geometric discrepancy: 0.4364

The information below is about IL_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66997.2

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

6VZJ|1|D|G|203
6VZJ|1|D|G|204
6VZJ|1|D|A|205
6VZJ|1|D|C|206
6VZJ|1|D|C|207
*
6VZJ|1|D|G|212
6VZJ|1|D|G|213
6VZJ|1|D|C|214

Current chains

Chain D

16S rRNA

Nearby chains