IL_6VZJ_042

3D structure

PDB id

6VZJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing mRNA with a 15 nt long spacer, fMet-tRNAs at E-site and P-site, and lacking transcription factor NusG

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VZJ_042 not in the Motif Atlas

Homologous match to IL_6CZR_150

Geometric discrepancy: 0.1966

The information below is about IL_6CZR_150

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VZJ|1|D|G|953
6VZJ|1|D|G|954
*
6VZJ|1|D|C|1226
6VZJ|1|D|A|1227
6VZJ|1|D|C|1228

Current chains

Chain D

16S rRNA

Nearby chains

Chain B

Transfer RNA; tRNA

Chain W

30S ribosomal protein S19

Chain X

30S ribosomal protein S13