IL_6VZJ_045

3D structure

PDB id

6VZJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing mRNA with a 15 nt long spacer, fMet-tRNAs at E-site and P-site, and lacking transcription factor NusG

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GAAG*UGUGCCUUCGGGAAC

Length

19 nucleotides

Bulged bases

6VZJ|1|D|U|1025, 6VZJ|1|D|U|1030, 6VZJ|1|D|G|1032

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VZJ|1|D|G|1003
6VZJ|1|D|A|1004
6VZJ|1|D|A|1005
6VZJ|1|D|G|1006
*
6VZJ|1|D|U|1023
6VZJ|1|D|G|1024
6VZJ|1|D|U|1025
6VZJ|1|D|G|1026
6VZJ|1|D|C|1027
6VZJ|1|D|C|1028
6VZJ|1|D|U|1029
6VZJ|1|D|U|1030
6VZJ|1|D|C|1031
6VZJ|1|D|G|1032
6VZJ|1|D|G|1033
6VZJ|1|D|G|1034
6VZJ|1|D|A|1035
6VZJ|1|D|A|1036
6VZJ|1|D|C|1037

Current chains

Chain D

16S rRNA

Nearby chains

Chain AA

DNA-directed RNA polymerase subunit beta

Chain S

30S ribosomal protein S14