IL_6VZJ_060

3D structure

PDB id

6VZJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing mRNA with a 15 nt long spacer, fMet-tRNAs at E-site and P-site, and lacking transcription factor NusG

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GCCG*CGAAC

Length

9 nucleotides

Bulged bases

6VZJ|1|D|C|1403

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VZJ|1|D|G|1401
6VZJ|1|D|C|1403
6VZJ|1|D|C|1404
6VZJ|1|D|G|1405
*
6VZJ|1|D|C|1496
6VZJ|1|D|G|1497
6VZJ|1|D|A|1499
6VZJ|1|D|A|1500
6VZJ|1|D|C|1501

Current chains

Chain D

16S rRNA

Nearby chains

Chain 7

mRNA with 27 nt long spacer

Chain B

Transfer RNA; tRNA

Chain a

Large subunit ribosomal RNA; LSU rRNA