IL_6VZJ_070
3D structure
- PDB id
- 6VZJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation complex A1 (TTC-A1) containing mRNA with a 15 nt long spacer, fMet-tRNAs at E-site and P-site, and lacking transcription factor NusG
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- GUAAG*CGUUAUAAC
- Length
- 14 nucleotides
- Bulged bases
- 6VZJ|1|a|U|102
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6VZJ_070 not in the Motif Atlas
- Homologous match to IL_5J7L_248
- Geometric discrepancy: 0.0702
- The information below is about IL_5J7L_248
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_37015.1
- Basepair signature
- cWW-tSS-tSS-tHH-L-tHS-L-R-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
6VZJ|1|a|G|81
6VZJ|1|a|U|82
6VZJ|1|a|A|83
6VZJ|1|a|A|84
6VZJ|1|a|G|85
*
6VZJ|1|a|C|97
6VZJ|1|a|G|98
6VZJ|1|a|U|99
6VZJ|1|a|U|100
6VZJ|1|a|A|101
6VZJ|1|a|U|102
6VZJ|1|a|A|103
6VZJ|1|a|A|104
6VZJ|1|a|C|105
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 3
- 50S ribosomal protein L24
- Chain e
- 50S ribosomal protein L29
Coloring options: