IL_6VZJ_105

3D structure

PDB id

6VZJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing mRNA with a 15 nt long spacer, fMet-tRNAs at E-site and P-site, and lacking transcription factor NusG

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

6VZJ|1|a|U|1033

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VZJ_105 not in the Motif Atlas

Homologous match to IL_7RQB_041

Geometric discrepancy: 0.0567

The information below is about IL_7RQB_041

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_43275.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

30

Unit IDs

6VZJ|1|a|G|1031
6VZJ|1|a|A|1032
6VZJ|1|a|U|1033
6VZJ|1|a|G|1034
*
6VZJ|1|a|C|1121
6VZJ|1|a|G|1122
6VZJ|1|a|C|1123

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

5S ribosomal RNA; 5S rRNA

Chain q

50S ribosomal protein L36

Chain v

50S ribosomal protein L16