IL_6VZJ_143

3D structure

PDB id

6VZJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing mRNA with a 15 nt long spacer, fMet-tRNAs at E-site and P-site, and lacking transcription factor NusG

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

UUAG*CGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VZJ_143 not in the Motif Atlas

Homologous match to IL_5J7L_317

Geometric discrepancy: 0.1035

The information below is about IL_5J7L_317

Detailed Annotation

UAA/GAN related

Broad Annotation

No text annotation

Motif group

IL_77691.5

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

6VZJ|1|a|U|1864
6VZJ|1|a|U|1865
6VZJ|1|a|A|1866
6VZJ|1|a|G|1867
*
6VZJ|1|a|C|1874
6VZJ|1|a|G|1875
6VZJ|1|a|A|1876
6VZJ|1|a|A|1877
6VZJ|1|a|G|1878

Current chains

Chain a

23S rRNA

Nearby chains