IL_6VZJ_156

3D structure

PDB id

6VZJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing mRNA with a 15 nt long spacer, fMet-tRNAs at E-site and P-site, and lacking transcription factor NusG

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

UGGGAG*CGACCUUGAAAUACCA

Length

22 nucleotides

Bulged bases

6VZJ|1|a|U|2172

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VZJ|1|a|U|2122
6VZJ|1|a|G|2123
6VZJ|1|a|G|2124
6VZJ|1|a|G|2125
6VZJ|1|a|A|2126
6VZJ|1|a|G|2127
*
6VZJ|1|a|C|2161
6VZJ|1|a|G|2162
6VZJ|1|a|A|2163
6VZJ|1|a|C|2164
6VZJ|1|a|C|2165
6VZJ|1|a|U|2166
6VZJ|1|a|U|2167
6VZJ|1|a|G|2168
6VZJ|1|a|A|2169
6VZJ|1|a|A|2170
6VZJ|1|a|A|2171
6VZJ|1|a|U|2172
6VZJ|1|a|A|2173
6VZJ|1|a|C|2174
6VZJ|1|a|C|2175
6VZJ|1|a|A|2176

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Transfer RNA; tRNA