IL_6VZJ_191

3D structure

PDB id

6VZJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing mRNA with a 15 nt long spacer, fMet-tRNAs at E-site and P-site, and lacking transcription factor NusG

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GAAGCGACC*GCAAGCGGACC

Length

20 nucleotides

Bulged bases

6VZJ|1|D|A|1257, 6VZJ|1|D|A|1280, 6VZJ|1|D|C|1281

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VZJ|1|D|G|1255
6VZJ|1|D|A|1256
6VZJ|1|D|A|1257
6VZJ|1|D|G|1258
6VZJ|1|D|C|1259
6VZJ|1|D|G|1260
6VZJ|1|D|A|1261
6VZJ|1|D|C|1262
6VZJ|1|D|C|1263
*
6VZJ|1|D|G|1272
6VZJ|1|D|C|1273
6VZJ|1|D|A|1274
6VZJ|1|D|A|1275
6VZJ|1|D|G|1276
6VZJ|1|D|C|1277
6VZJ|1|D|G|1278
6VZJ|1|D|G|1279
6VZJ|1|D|A|1280
6VZJ|1|D|C|1281
6VZJ|1|D|C|1282

Current chains

Chain D

16S rRNA

Nearby chains

Chain I

30S ribosomal protein S3

Chain P

30S ribosomal protein S10

Chain S

30S ribosomal protein S14

Chain W

30S ribosomal protein S19