IL_6VZJ_195

3D structure

PDB id

6VZJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing mRNA with a 15 nt long spacer, fMet-tRNAs at E-site and P-site, and lacking transcription factor NusG

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CCCAGACAGCC*GGUCGAG

Length

18 nucleotides

Bulged bases

6VZJ|1|a|A|1046

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VZJ|1|a|C|1043
6VZJ|1|a|C|1044
6VZJ|1|a|C|1045
6VZJ|1|a|A|1046
6VZJ|1|a|G|1047
6VZJ|1|a|A|1048
6VZJ|1|a|C|1049
6VZJ|1|a|A|1050
6VZJ|1|a|G|1051
6VZJ|1|a|C|1052
6VZJ|1|a|C|1053
*
6VZJ|1|a|G|1106
6VZJ|1|a|G|1107
6VZJ|1|a|U|1108
6VZJ|1|a|C|1109
6VZJ|1|a|G|1110
6VZJ|1|a|A|1111
6VZJ|1|a|G|1112

Current chains

Chain a

23S rRNA

Nearby chains

Chain 9

50S ribosomal protein L10

Chain p

50S ribosomal protein L6

Chain q

50S ribosomal protein L36