IL_6W2S_003

3D structure

PDB id

6W2S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the open state (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

GUGUC*GUAUC

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6W2S_003 not in the Motif Atlas

Geometric match to IL_4WFL_001

Geometric discrepancy: 0.3342

The information below is about IL_4WFL_001

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

6W2S|1|0|G|374
6W2S|1|0|U|375
6W2S|1|0|G|376
6W2S|1|0|U|377
6W2S|1|0|C|378
*
6W2S|1|0|G|445
6W2S|1|0|U|446
6W2S|1|0|A|447
6W2S|1|0|U|448
6W2S|1|0|C|449

Current chains

Chain 0

CrPV 5'-UTR IRES

Nearby chains

Chain h

RACK1