IL_6W2S_012

3D structure

PDB id

6W2S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the open state (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

CAAA*UGACG

Length

9 nucleotides

Bulged bases

6W2S|1|A|A|516

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6W2S_012 not in the Motif Atlas

Geometric match to IL_4WF9_016

Geometric discrepancy: 0.3121

The information below is about IL_4WF9_016

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

6W2S|1|A|C|37
6W2S|1|A|A|38
6W2S|1|A|A|39
6W2S|1|A|A|40
*
6W2S|1|A|U|514
6W2S|1|A|G|515
6W2S|1|A|A|516
6W2S|1|A|C|517
6W2S|1|A|G|518

Current chains

Chain A

18S rRNA

Nearby chains

Chain F

eS4

Chain K

uS4