IL_6W2S_020
3D structure
- PDB id
- 6W2S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the open state (Class 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.47 Å
Loop
- Sequence
- UCCUUU*AUUCG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6W2S_020 not in the Motif Atlas
- Homologous match to IL_4V88_393
- Geometric discrepancy: 0.1581
- The information below is about IL_4V88_393
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_37842.2
- Basepair signature
- cWW-cWW-L-R-cWW-cWW-R-L
- Number of instances in this motif group
- 4
Unit IDs
6W2S|1|A|U|116
6W2S|1|A|C|117
6W2S|1|A|C|118
6W2S|1|A|U|119
6W2S|1|A|U|120
6W2S|1|A|U|121
*
6W2S|1|A|A|343
6W2S|1|A|U|344
6W2S|1|A|U|345
6W2S|1|A|C|346
6W2S|1|A|G|347
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain F
- eS4
- Chain J
- eS8
Coloring options: