IL_6W2S_030

3D structure

PDB id

6W2S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the open state (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

GAU*AC

Length

5 nucleotides

Bulged bases

6W2S|1|A|A|313

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6W2S_030 not in the Motif Atlas

Homologous match to IL_4V88_399

Geometric discrepancy: 0.1739

The information below is about IL_4V88_399

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

6W2S|1|A|G|312
6W2S|1|A|A|313
6W2S|1|A|U|314
*
6W2S|1|A|A|336
6W2S|1|A|C|337

Current chains

Chain A

18S rRNA

Nearby chains

Chain F

eS4

Chain H

eS6