IL_6W2S_033

3D structure

PDB id

6W2S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the open state (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

6W2S|1|A|U|368, 6W2S|1|A|C|369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6W2S_033 not in the Motif Atlas

Geometric match to IL_5Y58_001

Geometric discrepancy: 0.2389

The information below is about IL_5Y58_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_59877.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

6W2S|1|A|U|366
6W2S|1|A|U|367
6W2S|1|A|U|368
6W2S|1|A|C|369
6W2S|1|A|G|370
6W2S|1|A|A|371
*
6W2S|1|A|U|393
6W2S|1|A|G|394

Current chains

Chain A

18S rRNA

Nearby chains

Chain J

eS8

Chain M

uS17