IL_6W2S_042

3D structure

PDB id

6W2S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the open state (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

GAG*CGAGGAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6W2S_042 not in the Motif Atlas

Homologous match to IL_8C3A_420

Geometric discrepancy: 0.165

The information below is about IL_8C3A_420

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14882.1

Basepair signature

cWW-tSH-L-cWW-L-L-R-L

Number of instances in this motif group

1

Unit IDs

6W2S|1|A|G|563
6W2S|1|A|A|564
6W2S|1|A|G|565
*
6W2S|1|A|C|585
6W2S|1|A|G|586
6W2S|1|A|A|587
6W2S|1|A|G|588
6W2S|1|A|G|589
6W2S|1|A|A|590
6W2S|1|A|U|591
6W2S|1|A|C|592

Current chains

Chain A

18S rRNA

Nearby chains

Chain K

uS4

Chain f

eS30