IL_6W2S_043

3D structure

PDB id

6W2S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the open state (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

UCCA*UUAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6W2S_043 not in the Motif Atlas

Geometric match to IL_5UNE_005

Geometric discrepancy: 0.2485

The information below is about IL_5UNE_005

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_76776.1

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

6W2S|1|A|U|566
6W2S|1|A|C|567
6W2S|1|A|C|568
6W2S|1|A|A|569
*
6W2S|1|A|U|581
6W2S|1|A|U|582
6W2S|1|A|A|583
6W2S|1|A|A|584

Current chains

Chain A

18S rRNA

Nearby chains

Chain K

uS4

Chain Z

eS24