IL_6W2S_044

3D structure

PDB id

6W2S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the open state (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

AGGGCAAGUC*GCU

Length

13 nucleotides

Bulged bases

6W2S|1|A|U|607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6W2S|1|A|A|599
6W2S|1|A|G|600
6W2S|1|A|G|601
6W2S|1|A|G|602
6W2S|1|A|C|603
6W2S|1|A|A|604
6W2S|1|A|A|605
6W2S|1|A|G|606
6W2S|1|A|U|607
6W2S|1|A|C|608
*
6W2S|1|A|G|635
6W2S|1|A|C|636
6W2S|1|A|U|637

Current chains

Chain A

18S rRNA

Nearby chains

Chain D

uS5

Chain E

uS3

Chain K

uS4

Chain f

eS30