IL_6W2S_059

3D structure

PDB id

6W2S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the open state (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

GGAC*GUUUU

Length

9 nucleotides

Bulged bases

6W2S|1|A|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6W2S_059 not in the Motif Atlas

Homologous match to IL_4V88_429

Geometric discrepancy: 0.1151

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

6W2S|1|A|G|924
6W2S|1|A|G|925
6W2S|1|A|A|926
6W2S|1|A|C|927
*
6W2S|1|A|G|1014
6W2S|1|A|U|1015
6W2S|1|A|U|1016
6W2S|1|A|U|1017
6W2S|1|A|U|1018

Current chains

Chain A

18S rRNA

Nearby chains

Chain 2

Eukaryotic translation initiation factor 3 subunit C

Chain O

uS15

Chain c

eS27